Please take a look at the 'Toolbar that looks like MenuBar' toolbar and compare the height IE6 v.s FF.
http://archive.dojotoolkit.org/nightly/dojotoolkit/dijit/tests/test_Tool...
Why there's a difference in height between these two browsers? The IE toolbar is taller. Obviously, the difference creates placement issues.

I created a ticket
This looks like a minor CSS regression.
http://bugs.dojotoolkit.org/ticket/7759